Variant report

Variant	rs1001569
Chromosome Location	chr2:209310187-209310188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10172822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13016936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13032031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13383524	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13403425	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1370369	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1437415	0.96[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1437416	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs3754817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3769521	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9288393	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584297	chr2:209020181-209316760	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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