Variant report

Variant	rs10015734
Chromosome Location	chr4:7651008-7651009
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7647729..7649234-chr4:7649422..7652337,2	K562	blood:
2	chr4:7639269..7641408-chr4:7650130..7651685,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10004763	0.81[EUR][1000 genomes]
rs10005748	0.91[EUR][1000 genomes]
rs10006835	0.89[EUR][1000 genomes]
rs11932646	0.84[AMR][1000 genomes]
rs11936769	0.84[AMR][1000 genomes]
rs28643428	0.89[EUR][1000 genomes]
rs57534629	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62290668	0.91[EUR][1000 genomes]
rs62290672	0.87[EUR][1000 genomes]
rs62290676	0.89[EUR][1000 genomes]
rs6826370	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916610	chr4:7238883-7731946	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
2	esv34156	chr4:7526515-7750588	Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv878570	chr4:7534603-7836835	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv491712	chr4:7582506-8155069	Enhancers Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
5	nsv508272	chr4:7591967-7722112	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv878571	chr4:7637297-7743283	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7644600-7652600	Weak transcription	Brain Anterior Caudate	brain
2	chr4:7644800-7652600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr4:7644800-7652800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr4:7646600-7651200	Weak transcription	HSMMtube	muscle
5	chr4:7646600-7651400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:7646600-7652000	Weak transcription	Brain Substantia Nigra	brain
7	chr4:7646600-7656400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:7647200-7651600	Enhancers	HepG2	liver
9	chr4:7648200-7654800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr4:7648200-7654800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr4:7648400-7651200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr4:7648400-7652200	Weak transcription	Esophagus	oesophagus
13	chr4:7648400-7653600	Enhancers	HUVEC	blood vessel
14	chr4:7648400-7658000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr4:7648600-7652200	Enhancers	Spleen	Spleen
16	chr4:7648600-7653800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:7648800-7651200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:7648800-7653000	Enhancers	Primary B cells from cord blood	blood
19	chr4:7648800-7653000	Enhancers	Primary T cells fromperipheralblood	blood
20	chr4:7649000-7651200	Weak transcription	Pancreas	Pancrea
21	chr4:7649000-7652800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr4:7649000-7655000	Enhancers	NH-A	brain
23	chr4:7649200-7651200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr4:7649200-7651400	Enhancers	Hela-S3	cervix
25	chr4:7649200-7652400	Enhancers	Primary neutrophils fromperipheralblood	blood
26	chr4:7649200-7653800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr4:7649400-7651400	Enhancers	Lung	lung
28	chr4:7649400-7653800	Enhancers	NHLF	lung
29	chr4:7649400-7654000	Enhancers	Muscle Satellite Cultured Cells	--
30	chr4:7649400-7655000	Enhancers	Duodenum Mucosa	Duodenum
31	chr4:7649400-7655000	Enhancers	HSMM	muscle
32	chr4:7649600-7651800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr4:7649600-7653400	Enhancers	NHDF-Ad	bronchial
34	chr4:7649600-7653800	Enhancers	Osteobl	bone
35	chr4:7649600-7654600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr4:7649600-7655000	Enhancers	Adipose Nuclei	Adipose
37	chr4:7649600-7655600	Enhancers	HMEC	breast
38	chr4:7649600-7657400	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr4:7649600-7659000	Enhancers	Ovary	ovary
40	chr4:7649800-7651200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr4:7649800-7651200	Enhancers	Fetal Muscle Leg	muscle
42	chr4:7649800-7657000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:7650000-7653600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr4:7650000-7658600	Enhancers	Breast Myoepithelial Primary Cells	Breast
45	chr4:7650200-7651400	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:7650200-7652000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:7650400-7651400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:7650400-7651400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr4:7650400-7652400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr4:7650600-7651200	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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