Variant report

Variant	rs10016561
Chromosome Location	chr4:125797710-125797711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10004729	0.86[EUR][1000 genomes]
rs10004734	0.86[EUR][1000 genomes]
rs10030199	0.86[EUR][1000 genomes]
rs1032930	0.85[EUR][1000 genomes]
rs1105992	0.85[EUR][1000 genomes]
rs12374334	0.90[EUR][1000 genomes]
rs12506706	0.82[EUR][1000 genomes]
rs12650300	0.86[EUR][1000 genomes]
rs1395328	0.82[EUR][1000 genomes]
rs1483607	0.96[EUR][1000 genomes]
rs1483611	0.83[EUR][1000 genomes]
rs1506552	0.90[ASN][1000 genomes]
rs16997819	0.86[EUR][1000 genomes]
rs17008768	0.84[EUR][1000 genomes]
rs1843000	0.95[EUR][1000 genomes]
rs1909101	0.82[EUR][1000 genomes]
rs1995628	0.85[EUR][1000 genomes]
rs2086765	0.85[EUR][1000 genomes]
rs2128845	0.82[EUR][1000 genomes]
rs2170745	0.84[EUR][1000 genomes]
rs2170748	0.80[EUR][1000 genomes]
rs28733838	0.86[EUR][1000 genomes]
rs34713532	0.85[EUR][1000 genomes]
rs4585320	0.82[EUR][1000 genomes]
rs4632674	0.81[EUR][1000 genomes]
rs4833309	0.87[EUR][1000 genomes]
rs4834007	0.86[EUR][1000 genomes]
rs56246326	0.86[EUR][1000 genomes]
rs62323305	0.87[EUR][1000 genomes]
rs67838067	0.85[EUR][1000 genomes]
rs6810487	0.82[EUR][1000 genomes]
rs6814405	0.84[EUR][1000 genomes]
rs6826258	0.86[EUR][1000 genomes]
rs6829998	0.84[EUR][1000 genomes]
rs6857049	0.85[EUR][1000 genomes]
rs6857658	0.85[EUR][1000 genomes]
rs72683882	0.82[EUR][1000 genomes]
rs72685850	0.82[EUR][1000 genomes]
rs7672680	0.83[EUR][1000 genomes]
rs7677690	0.86[EUR][1000 genomes]
rs7677713	0.86[EUR][1000 genomes]
rs951529	0.87[EUR][1000 genomes]
rs951530	0.85[EUR][1000 genomes]
rs9637630	0.84[EUR][1000 genomes]
rs9654205	0.86[EUR][1000 genomes]
rs976412	0.82[EUR][1000 genomes]
rs976539	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011752	chr4:125708756-125932456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1001338	chr4:125708756-126103293	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv830050	chr4:125717858-125888563	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv879884	chr4:125791252-125841892	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879885	chr4:125791252-125852874	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879886	chr4:125791252-125856465	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10016561	ANKRD50	cis	Artery Tibial	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125796200-125797800	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:125796600-125797800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:125796600-125797800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:125796800-125797800	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr4:125796800-125798200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:125797600-125798400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell

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