Variant report

Variant	rs10016690
Chromosome Location	chr4:62359319-62359320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10008278	1.00[JPT][hapmap];0.80[EUR][1000 genomes]
rs13150558	1.00[CHB][hapmap]
rs9995985	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868844	chr4:62241702-62497248	Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753138	chr4:62271444-62442507	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1005770	chr4:62344379-62398798	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv537109	chr4:62344379-62398798	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:62356200-62359400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr4:62358200-62359800	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr4:62358400-62359800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr4:62358400-62359800	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr4:62358400-62360000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr4:62358400-62360200	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr4:62358600-62359800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr4:62358600-62360200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:62359000-62359600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr4:62359000-62360200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr4:62359200-62360400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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