Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10026649	0.93[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs10029403	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs1015950	0.80[JPT][hapmap]
rs10516404	0.87[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap]
rs10938866	0.86[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs10938868	0.93[CEU][hapmap];0.84[CHB][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10938869	0.93[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap]
rs11944614	0.86[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs12507277	0.87[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]
rs12641888	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12646862	0.86[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs13102882	0.93[CEU][hapmap];0.90[JPT][hapmap]
rs13109656	0.93[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs13126050	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap]
rs13132720	0.81[JPT][hapmap]
rs13132737	0.81[JPT][hapmap]
rs1398838	0.87[CEU][hapmap];0.81[JPT][hapmap]
rs16872134	0.93[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap]
rs2874977	0.85[JPT][hapmap]
rs6821401	0.86[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs727633	0.86[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs7356396	0.84[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap]
rs7684869	0.97[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9995524	0.86[CEU][hapmap];0.85[CHB][hapmap];0.95[JPT][hapmap]
rs9997450	0.87[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817467	chr4:21602921-22422816	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2757924	chr4:21873204-21980559	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759231	chr4:21873204-21980559	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv428440	chr4:21873204-21980559	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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