Variant report

Variant	rs10017610
Chromosome Location	chr4:91201912-91201913
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10003175	1.00[YRI][hapmap]
rs10006745	0.90[AFR][1000 genomes]
rs10020838	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10023708	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10024466	0.90[AFR][1000 genomes]
rs10028662	1.00[YRI][hapmap]
rs10031156	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs11931823	0.83[YRI][hapmap]
rs11935149	1.00[AFR][1000 genomes]
rs11935712	1.00[YRI][hapmap]
rs11944278	1.00[AFR][1000 genomes]
rs28410634	0.90[AFR][1000 genomes]
rs28578524	1.00[AFR][1000 genomes]
rs28623563	1.00[AFR][1000 genomes]
rs28655954	0.90[AFR][1000 genomes]
rs28698940	1.00[AFR][1000 genomes]
rs28700165	1.00[AFR][1000 genomes]
rs28712847	1.00[AFR][1000 genomes]
rs28757647	1.00[AFR][1000 genomes]
rs9654162	1.00[AFR][1000 genomes]
rs9995287	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470053	chr4:90879613-91439573	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1007826	chr4:91049593-91438961	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv537177	chr4:91049593-91438961	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv999065	chr4:91049593-91520073	Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1007804	chr4:91122398-91217331	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv879540	chr4:91156104-91212092	Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv879541	chr4:91156104-91253355	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv879542	chr4:91185206-91287204	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	nsv818250	chr4:91195869-91212092	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv524051	chr4:91195869-91227681	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:91200800-91203200	Enhancers	Fetal Intestine Large	intestine
2	chr4:91201400-91202200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:91201400-91202200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
4	chr4:91201400-91202400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:91201400-91203200	Enhancers	Fetal Intestine Small	intestine
6	chr4:91201600-91202800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:91201800-91202200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:91201800-91204000	Enhancers	Fetal Brain Female	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links