Variant report

Variant	rs10019041
Chromosome Location	chr4:74518639-74518640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10026404	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs11942051	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1590118	0.96[ASN][1000 genomes]
rs34617010	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34700776	0.86[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4694176	0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4694627	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4694629	0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4694632	0.88[ASN][1000 genomes]
rs62312151	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs62314280	0.96[ASN][1000 genomes]
rs6832422	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1008104	chr4:74468434-74621952	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv1012198	chr4:74487793-74621952	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
5	nsv537139	chr4:74487793-74621952	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74514000-74519200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:74515400-74519400	Enhancers	Thymus	Thymus
3	chr4:74516400-74525000	Weak transcription	Stomach Mucosa	stomach
4	chr4:74516800-74521600	Enhancers	Dnd41	blood
5	chr4:74517000-74518800	Genic enhancers	Fetal Thymus	thymus
6	chr4:74517400-74526400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:74517800-74519800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:74518600-74518800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:74518600-74520000	Weak transcription	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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