Variant report

Variant	rs10019164
Chromosome Location	chr4:85579575-85579576
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11724113	0.81[EUR][1000 genomes]
rs11735541	0.81[EUR][1000 genomes]
rs12512391	0.81[EUR][1000 genomes]
rs1372971	0.81[EUR][1000 genomes]
rs1838039	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85526800-85583000	Weak transcription	Gastric	stomach
2	chr4:85529400-85581600	Weak transcription	Ovary	ovary
3	chr4:85529600-85587600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:85564800-85587800	Weak transcription	Fetal Kidney	kidney
5	chr4:85568800-85589600	Weak transcription	Brain Angular Gyrus	brain
6	chr4:85569200-85587200	Weak transcription	Brain Anterior Caudate	brain
7	chr4:85569600-85582600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:85571000-85588800	Weak transcription	Left Ventricle	heart
9	chr4:85571000-85592400	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:85571200-85581400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:85572200-85587800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:85573200-85588600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:85573400-85582400	Weak transcription	Fetal Heart	heart
14	chr4:85577200-85587800	Weak transcription	HSMMtube	muscle
15	chr4:85577600-85592400	Weak transcription	Aorta	Aorta
16	chr4:85577800-85581000	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr4:85578200-85589400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:85578600-85579600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr4:85578800-85579600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr4:85579000-85589400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr4:85579200-85579600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:85579200-85579600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:85579200-85579600	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr4:85579400-85590200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links