Variant report

Variant	rs10019273
Chromosome Location	chr4:174112536-174112537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:174111282..174114186-chr4:174114823..174117851,4	K562	blood:
2	chr4:174105689..174108453-chr4:174111352..174113074,2	K562	blood:
3	chr4:174087959..174091632-chr4:174112021..174114740,3	MCF-7	breast:
4	chr4:174111619..174113962-chr4:174147464..174149015,2	K562	blood:
5	chr4:174110382..174112789-chr4:174141810..174144337,2	K562	blood:
6	chr4:174105689..174108523-chr4:174110844..174113074,3	K562	blood:

Variant related genes	Relation type
ENSG00000245213	Chromatin interaction
ENSG00000109586	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1991726	1.00[ASN][1000 genomes]
rs28396548	0.85[AFR][1000 genomes]
rs28588137	0.85[AFR][1000 genomes]
rs28701642	0.85[AFR][1000 genomes]
rs9997466	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799519	chr4:174090004-174173743	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:174091600-174113600	Weak transcription	Esophagus	oesophagus
2	chr4:174104000-174112600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:174104000-174157200	Weak transcription	Ovary	ovary
4	chr4:174104600-174112600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr4:174105000-174116400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:174106600-174114200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr4:174107000-174117800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr4:174107400-174120800	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:174107600-174112600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr4:174107600-174115400	Weak transcription	Primary B cells from cord blood	blood
11	chr4:174107600-174115400	Weak transcription	Primary B cells from peripheral blood	blood
12	chr4:174107800-174116200	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr4:174108000-174112800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:174108000-174113800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr4:174108600-174114200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr4:174108800-174126800	Weak transcription	Spleen	Spleen
17	chr4:174109000-174112600	Weak transcription	GM12878-XiMat	blood
18	chr4:174109000-174116600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr4:174109200-174112600	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr4:174109400-174113000	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr4:174109600-174112600	Weak transcription	NHDF-Ad	bronchial
22	chr4:174110000-174113200	Weak transcription	Primary hematopoietic stem cells	blood
23	chr4:174110200-174116400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:174110200-174118800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:174110400-174112600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:174110600-174113800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr4:174110600-174117000	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr4:174110800-174112600	Weak transcription	HSMM	muscle
29	chr4:174111000-174116800	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr4:174111200-174113000	Enhancers	Small Intestine	intestine
31	chr4:174111200-174114000	Enhancers	Fetal Intestine Large	intestine
32	chr4:174111200-174114600	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr4:174111200-174116800	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr4:174111400-174112600	Enhancers	Duodenum Mucosa	Duodenum
35	chr4:174111400-174114200	Enhancers	Fetal Intestine Small	intestine
36	chr4:174111800-174113000	Enhancers	Thymus	Thymus
37	chr4:174111800-174114200	Enhancers	H9 Cell Line	embryonic stem cell
38	chr4:174111800-174114200	Enhancers	Dnd41	blood
39	chr4:174111800-174114200	Enhancers	HMEC	breast
40	chr4:174112000-174112600	Enhancers	Brain Hippocampus Middle	brain
41	chr4:174112000-174112600	Enhancers	Colonic Mucosa	Colon
42	chr4:174112000-174112600	Enhancers	NH-A	brain
43	chr4:174112000-174112800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr4:174112000-174113000	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr4:174112000-174113200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr4:174112000-174113400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr4:174112000-174113400	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr4:174112000-174113600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
49	chr4:174112000-174114200	Enhancers	H1 Cell Line	embryonic stem cell
50	chr4:174112000-174114200	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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