Variant report
| Variant | rs10019535 |
|---|---|
| Chromosome Location | chr4:125469272-125469273 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10029005 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10034765 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs10050220 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs101927 | 0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11937064 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs13124572 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1509523 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1509526 | 0.93[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs1509527 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs1907812 | 0.85[CHB][hapmap] |
| rs312489 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs312493 | 0.93[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs312494 | 0.80[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs312496 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs312497 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs312498 | 0.82[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs312504 | 0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs312509 | 0.93[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs312518 | 0.92[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs4340804 | 0.82[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs4367185 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs56003248 | 0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv868977 | chr4:124841128-125550637 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv879880 | chr4:125174817-125494547 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125469200-125469800 | Enhancers | Fetal Kidney | kidney |
