Variant report
| Variant | rs10020707 |
|---|---|
| Chromosome Location | chr4:27732163-27732164 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-STIM2-7 | chr4:27731935-27732227 | NONHSAT095902 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10020048 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10517128 | 0.83[AMR][1000 genomes] |
| rs28378123 | 1.00[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs28491708 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28546903 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28644287 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6819517 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6847283 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7683015 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7683777 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013877 | chr4:27539626-28051576 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv878770 | chr4:27680483-27844411 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1012113 | chr4:27694978-27819838 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 4 | nsv537057 | chr4:27694978-27819838 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | n/a |
| 5 | nsv964034 | chr4:27730950-27732410 | Enhancers | lncRNA | n/a | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
