Variant report

Variant	rs10021671
Chromosome Location	chr4:160513529-160513530
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10010706	1.00[AFR][1000 genomes]
rs10018944	0.81[AFR][1000 genomes]
rs10021928	1.00[AFR][1000 genomes]
rs12331556	1.00[AFR][1000 genomes]
rs28602894	0.93[AFR][1000 genomes]
rs28609401	0.93[AFR][1000 genomes]
rs28647506	0.86[AFR][1000 genomes]
rs28847974	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015469	chr4:160389277-160841619	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv537316	chr4:160389277-160841619	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160508400-160513800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr4:160508600-160526800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:160509200-160514200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:160512200-160513600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:160512200-160513600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr4:160512200-160514000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:160512400-160513600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr4:160512400-160513800	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr4:160512400-160513800	Weak transcription	Hela-S3	cervix
10	chr4:160513200-160514000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr4:160513400-160517200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr4:160513400-160517400	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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