Variant report

Variant	rs10021712
Chromosome Location	chr4:26640775-26640776
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10003174	1.00[AMR][1000 genomes]
rs10013787	1.00[AMR][1000 genomes]
rs10015831	1.00[AMR][1000 genomes]
rs28503267	1.00[AMR][1000 genomes]
rs28587794	1.00[AMR][1000 genomes]
rs9994237	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966489	chr4:26600972-26641744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26608800-26643600	Weak transcription	Fetal Heart	heart
3	chr4:26609600-26649400	Weak transcription	Psoas Muscle	Psoas
4	chr4:26613800-26657200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:26614200-26641400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr4:26615000-26642000	Weak transcription	Fetal Intestine Small	intestine
7	chr4:26615600-26641800	Weak transcription	Brain Germinal Matrix	brain
8	chr4:26615600-26642000	Weak transcription	Aorta	Aorta
9	chr4:26616600-26641800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:26616600-26641800	Weak transcription	Primary B cells from peripheral blood	blood
11	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:26617200-26642200	Weak transcription	Brain Angular Gyrus	brain
13	chr4:26618200-26657200	Weak transcription	Pancreas	Pancrea
14	chr4:26618400-26642000	Weak transcription	Esophagus	oesophagus
15	chr4:26619600-26645600	Weak transcription	Spleen	Spleen
16	chr4:26620200-26642200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:26620600-26643800	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr4:26621200-26642200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr4:26622000-26641000	Weak transcription	HMEC	breast
20	chr4:26622000-26642400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:26622000-26643800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:26622400-26645600	Weak transcription	NHLF	lung
23	chr4:26622400-26662400	Weak transcription	Right Ventricle	heart
24	chr4:26623000-26670400	Weak transcription	Gastric	stomach
25	chr4:26623200-26642000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:26625600-26665600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr4:26626000-26642200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr4:26626000-26645000	Weak transcription	Brain Substantia Nigra	brain
29	chr4:26627600-26644400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr4:26629000-26644400	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr4:26629400-26656800	Weak transcription	Lung	lung
33	chr4:26632800-26643800	Weak transcription	Primary B cells from cord blood	blood
34	chr4:26633800-26657000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr4:26633800-26658600	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr4:26634000-26642000	Weak transcription	Fetal Stomach	stomach
37	chr4:26634000-26657000	Weak transcription	Brain Hippocampus Middle	brain
38	chr4:26635000-26675200	Weak transcription	NHDF-Ad	bronchial
39	chr4:26635400-26641800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr4:26635400-26641800	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:26635600-26641400	Weak transcription	Fetal Lung	lung
42	chr4:26636000-26643600	Weak transcription	Liver	Liver
43	chr4:26636400-26642200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:26637600-26649400	Weak transcription	Placenta	Placenta
45	chr4:26637800-26641400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:26638600-26640800	Strong transcription	Primary T cells fromperipheralblood	blood
47	chr4:26638600-26643600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr4:26638800-26641000	Strong transcription	Primary T helper cells fromperipheralblood	blood
49	chr4:26638800-26641200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:26638800-26642000	Strong transcription	Fetal Thymus	thymus

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