Variant report

Variant	rs10022272
Chromosome Location	chr4:89781277-89781278
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10001319	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11097200	0.81[CEU][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11735482	1.00[CEU][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12649368	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1379934	0.84[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1563688	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17815876	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2100679	1.00[CEU][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34321014	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4456928	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62308743	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6847388	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7680357	0.81[EUR][1000 genomes]
rs7690881	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470051	chr4:89644931-90643144	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009354	chr4:89725914-89985155	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:89768800-89789400	Weak transcription	Fetal Intestine Small	intestine
2	chr4:89771000-89803200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:89773600-89784200	Weak transcription	Gastric	stomach
4	chr4:89778400-89782800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr4:89778800-89782200	Enhancers	Fetal Lung	lung
6	chr4:89779000-89781600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr4:89779400-89781400	Enhancers	Primary hematopoietic stem cells	blood
8	chr4:89779600-89781400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr4:89779600-89781600	Enhancers	Primary B cells from cord blood	blood
10	chr4:89779600-89782200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr4:89779800-89781800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:89779800-89782400	Enhancers	Fetal Stomach	stomach
13	chr4:89780000-89782000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:89780200-89782000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr4:89780400-89782000	Enhancers	Brain Anterior Caudate	brain
16	chr4:89780400-89782200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:89780400-89782200	Enhancers	Brain Hippocampus Middle	brain
18	chr4:89780400-89782200	Enhancers	Fetal Kidney	kidney
19	chr4:89780600-89782000	Enhancers	Stomach Smooth Muscle	stomach
20	chr4:89780800-89781600	Weak transcription	Ovary	ovary
21	chr4:89780800-89782200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr4:89780800-89782400	Enhancers	Rectal Smooth Muscle	rectum
23	chr4:89780800-89786000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:89780800-89786000	Weak transcription	NHDF-Ad	bronchial
25	chr4:89780800-89786000	Weak transcription	Osteobl	bone
26	chr4:89780800-89800600	Weak transcription	Pancreas	Pancrea
27	chr4:89781000-89781400	Weak transcription	Adipose Nuclei	Adipose
28	chr4:89781000-89781400	Weak transcription	Right Atrium	heart
29	chr4:89781000-89781800	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr4:89781000-89788200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:89781200-89782200	Enhancers	Brain Substantia Nigra	brain
32	chr4:89781200-89782200	Enhancers	Placenta	Placenta

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