Variant report

Variant	rs10022534
Chromosome Location	chr4:148123097-148123098
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10027201	0.80[ASN][1000 genomes]
rs10519877	0.82[ASN][1000 genomes]
rs1354883	0.80[ASN][1000 genomes]
rs1395816	0.80[ASN][1000 genomes]
rs1395819	0.80[ASN][1000 genomes]
rs1466985	0.80[ASN][1000 genomes]
rs1507484	0.80[ASN][1000 genomes]
rs1507488	0.82[ASN][1000 genomes]
rs1507489	0.82[ASN][1000 genomes]
rs1507490	0.80[ASN][1000 genomes]
rs1507491	0.80[ASN][1000 genomes]
rs1911587	0.80[ASN][1000 genomes]
rs2357598	0.82[ASN][1000 genomes]
rs4835073	0.80[ASN][1000 genomes]
rs4835380	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv830108	chr4:148114652-148311104	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148120000-148123200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:148120200-148123600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr4:148120200-148130200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:148121800-148123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:148123000-148123400	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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