Variant report

Variant	rs10025255
Chromosome Location	chr4:120903397-120903398
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10006059	1.00[AMR][1000 genomes]
rs10006149	1.00[AMR][1000 genomes]
rs10008021	1.00[AMR][1000 genomes]
rs10021225	1.00[AMR][1000 genomes]
rs10033582	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10212964	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10213223	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10222945	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28521451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28521621	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28545054	1.00[AMR][1000 genomes]
rs9307482	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532739	chr4:120392824-121098103	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
2	nsv879849	chr4:120823634-120922444	Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1007641	chr4:120884220-121555889	Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv537234	chr4:120884220-121555889	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv879850	chr4:120898509-120969089	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:120883400-120903400	Weak transcription	Left Ventricle	heart
2	chr4:120898600-120905800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:120902600-120903800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr4:120902800-120905800	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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