Variant report

Variant	rs10025305
Chromosome Location	chr4:87180278-87180279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:87179144..87180691-chr4:87183736..87185339,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10009161	0.87[AFR][1000 genomes]
rs10016847	0.87[AFR][1000 genomes]
rs10019871	0.87[AFR][1000 genomes]
rs10021706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10029339	0.87[AFR][1000 genomes]
rs10034428	0.87[AFR][1000 genomes]
rs11097102	0.87[AFR][1000 genomes]
rs11097103	0.95[AFR][1000 genomes]
rs11935211	0.95[AFR][1000 genomes]
rs12500319	0.86[AFR][1000 genomes]
rs12646076	0.87[AFR][1000 genomes]
rs1460750	0.87[AFR][1000 genomes]
rs1460756	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1460757	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1460758	0.95[AFR][1000 genomes]
rs1460759	0.93[AFR][1000 genomes]
rs1460763	0.83[AFR][1000 genomes]
rs1599313	0.87[AFR][1000 genomes]
rs17011421	0.83[AFR][1000 genomes]
rs2035057	0.86[AFR][1000 genomes]
rs2199309	0.82[AFR][1000 genomes]
rs2869421	0.87[AFR][1000 genomes]
rs28812808	0.90[AFR][1000 genomes]
rs6531905	0.89[AFR][1000 genomes]
rs6531906	0.94[AFR][1000 genomes]
rs6531907	0.95[AFR][1000 genomes]
rs6531909	0.97[AFR][1000 genomes]
rs6531910	0.97[AFR][1000 genomes]
rs6531911	0.97[AFR][1000 genomes]
rs6531912	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6531913	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6817452	0.95[AFR][1000 genomes]
rs6825521	0.88[AFR][1000 genomes]
rs6827698	0.87[AFR][1000 genomes]
rs6828947	0.87[AFR][1000 genomes]
rs6829870	0.97[AFR][1000 genomes]
rs6832259	0.87[AFR][1000 genomes]
rs6844365	0.87[AFR][1000 genomes]
rs6845605	0.95[AFR][1000 genomes]
rs6845742	0.95[AFR][1000 genomes]
rs7655797	0.87[AFR][1000 genomes]
rs7657056	0.82[AFR][1000 genomes]
rs7665868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7666231	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668374	0.87[AFR][1000 genomes]
rs7669487	0.87[AFR][1000 genomes]
rs7680934	0.97[AFR][1000 genomes]
rs7687771	0.87[AFR][1000 genomes]
rs7699047	0.85[AFR][1000 genomes]
rs922195	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9884127	0.93[AFR][1000 genomes]
rs9996693	0.87[AFR][1000 genomes]
rs9999403	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv594786	chr4:87076360-87609320	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
3	esv2763374	chr4:87151085-87184332	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv999470	chr4:87165663-87514552	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
5	nsv537164	chr4:87165663-87514552	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87149200-87186200	Weak transcription	Ovary	ovary
2	chr4:87155200-87185400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:87179200-87185400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr4:87179800-87183800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links