Variant report

Variant	rs10025531
Chromosome Location	chr4:125419929-125419930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1492753	1.00[ASN][1000 genomes]
rs1492754	1.00[ASN][1000 genomes]
rs1586893	0.82[ASN][1000 genomes]
rs17008248	1.00[ASN][1000 genomes]
rs17008270	0.94[ASN][1000 genomes]
rs17008309	0.93[ASN][1000 genomes]
rs2219365	0.82[ASN][1000 genomes]
rs2390688	0.84[ASN][1000 genomes]
rs61034856	1.00[ASN][1000 genomes]
rs72489586	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868977	chr4:124841128-125550637	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv879880	chr4:125174817-125494547	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv2760890	chr4:125273456-125466931	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv879881	chr4:125280852-125448288	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:125414400-125420200	Weak transcription	Fetal Muscle Leg	muscle
2	chr4:125415400-125420200	Weak transcription	Fetal Lung	lung
3	chr4:125419400-125420200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:125419600-125421600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:125419800-125420800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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