Variant report

Variant	rs10025593
Chromosome Location	chr4:165988983-165988984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11937305	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11942701	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12499237	0.83[AMR][1000 genomes]
rs12511399	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13114215	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13131689	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28396916	0.83[AMR][1000 genomes]
rs28722924	0.83[AMR][1000 genomes]
rs59423267	0.83[AMR][1000 genomes]
rs6536888	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6827932	0.91[ASN][1000 genomes]
rs6837162	0.83[AMR][1000 genomes]
rs6852992	0.91[ASN][1000 genomes]
rs6854474	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv1835468	chr4:165969625-166023258	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
8	esv1840053	chr4:165969625-166023258	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
9	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165979000-166005600	Weak transcription	Pancreas	Pancrea
2	chr4:165979200-165995000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:165980400-166000400	Weak transcription	Brain Angular Gyrus	brain
4	chr4:165980600-166005800	Weak transcription	Aorta	Aorta
5	chr4:165980600-166007000	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr4:165981000-165996800	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:165981000-165997400	Weak transcription	Brain Anterior Caudate	brain
8	chr4:165981000-165999000	Weak transcription	Brain Substantia Nigra	brain
9	chr4:165982000-166000400	Weak transcription	Ovary	ovary
10	chr4:165982200-166000400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr4:165985000-166007200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:165985200-165994000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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