Variant report

Variant	rs10026416
Chromosome Location	chr4:2891916-2891917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:2884994..2887786-chr4:2890994..2893239,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10030687	0.88[EUR][1000 genomes]
rs10031688	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10050109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843511	1.00[EUR][1000 genomes]
rs28510410	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28747380	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34209081	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35640772	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58168444	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3418626	chr4:2741174-3461492	Genic enhancers Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	esv3397632	chr4:2741239-3460583	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:2870200-2914000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr4:2871200-2896000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:2871200-2900600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr4:2874200-2900000	Weak transcription	Hela-S3	cervix
5	chr4:2876600-2919200	Strong transcription	Primary B cells from peripheral blood	blood
6	chr4:2877200-2919400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:2880600-2915000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:2881000-2895600	Weak transcription	Right Atrium	heart
9	chr4:2883000-2892400	Strong transcription	Fetal Intestine Small	intestine
10	chr4:2883600-2918600	Strong transcription	Fetal Stomach	stomach
11	chr4:2887800-2892400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:2888200-2892600	Weak transcription	Brain Substantia Nigra	brain
13	chr4:2888200-2893000	Weak transcription	NHDF-Ad	bronchial
14	chr4:2888200-2899200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:2888400-2895800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:2888600-2892800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr4:2888600-2893200	Weak transcription	Fetal Brain Female	brain
18	chr4:2888600-2895200	Weak transcription	Colonic Mucosa	Colon
19	chr4:2888600-2895200	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:2888600-2895400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr4:2888600-2895400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:2888600-2895400	Weak transcription	HMEC	breast
23	chr4:2888600-2896200	Weak transcription	Ovary	ovary
24	chr4:2888600-2896200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr4:2888600-2896400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:2888600-2896400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:2888600-2896600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr4:2888600-2896600	Weak transcription	Small Intestine	intestine
29	chr4:2888600-2897200	Weak transcription	NHEK	skin
30	chr4:2888600-2899600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr4:2888600-2899800	Weak transcription	Fetal Brain Male	brain
32	chr4:2888800-2893000	Weak transcription	Brain Angular Gyrus	brain
33	chr4:2888800-2893000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr4:2888800-2893000	Weak transcription	NH-A	brain
35	chr4:2888800-2895400	Weak transcription	Fetal Kidney	kidney
36	chr4:2888800-2896400	Weak transcription	NHLF	lung
37	chr4:2888800-2899400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr4:2889000-2892600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr4:2889000-2892600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr4:2889000-2895400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr4:2889000-2895400	Weak transcription	Primary hematopoietic stem cells	blood
42	chr4:2889000-2895600	Weak transcription	GM12878-XiMat	blood
43	chr4:2889000-2895600	Weak transcription	K562	blood
44	chr4:2889200-2893200	Weak transcription	Osteobl	bone
45	chr4:2889200-2895600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr4:2889200-2899400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr4:2889400-2895000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr4:2889400-2895800	Weak transcription	Stomach Smooth Muscle	stomach
49	chr4:2889600-2892600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:2889600-2892800	Weak transcription	Brain Anterior Caudate	brain

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