Variant report

Variant	rs10027525
Chromosome Location	chr4:172899171-172899172
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10021624	1.00[AMR][1000 genomes]
rs10021857	1.00[AMR][1000 genomes]
rs10022562	1.00[AMR][1000 genomes]
rs10471194	1.00[AMR][1000 genomes]
rs10471195	1.00[AMR][1000 genomes]
rs10471196	1.00[AMR][1000 genomes]
rs10471197	1.00[AMR][1000 genomes]
rs13434610	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13434620	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13435186	1.00[AMR][1000 genomes]
rs13435577	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28368507	1.00[AMR][1000 genomes]
rs28463325	1.00[AMR][1000 genomes]
rs28475852	1.00[AMR][1000 genomes]
rs28516370	1.00[AMR][1000 genomes]
rs28541484	1.00[AMR][1000 genomes]
rs28546731	1.00[AMR][1000 genomes]
rs28647375	1.00[AMR][1000 genomes]
rs28696751	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28702744	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28756913	1.00[AMR][1000 genomes]
rs58087716	1.00[AMR][1000 genomes]
rs61406189	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6851131	1.00[AMR][1000 genomes]
rs9995741	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv1025388	chr4:172891427-172951140	ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172896400-172900600	Weak transcription	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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