Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10007826	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10021230	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1366946	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1366949	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16850137	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2115691	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2367293	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28404022	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2886969	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2886970	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2968710	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3097409	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3097412	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3111697	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3111698	0.80[EUR][1000 genomes]
rs493091	0.81[AMR][1000 genomes]
rs516224	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs634304	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7674809	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7692638	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9991272	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv432612	chr4:74723372-74774372	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv525980	chr4:74731526-75382209	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74736800-74749000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:74740800-74743200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr4:74741800-74747800	Weak transcription	NHDF-Ad	bronchial
4	chr4:74742000-74748600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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