Variant report

Variant	rs10029163
Chromosome Location	chr4:152846266-152846267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10019474	0.91[AFR][1000 genomes]
rs10026345	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28440969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28650282	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28672873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59771919	1.00[AMR][1000 genomes]
rs60591855	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152836200-152851000	Weak transcription	Fetal Thymus	thymus
2	chr4:152843200-152847400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:152843200-152847400	Weak transcription	HMEC	breast
4	chr4:152843800-152847600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:152846000-152846600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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