Variant report

Variant	rs10029405
Chromosome Location	chr4:99522348-99522349
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10023449	0.81[ASN][1000 genomes]
rs11097622	0.88[ASN][1000 genomes]
rs11940430	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1358546	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1358547	0.88[ASN][1000 genomes]
rs1893713	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2866016	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4699354	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6532751	0.89[ASN][1000 genomes]
rs883619	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9996851	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99508800-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:99511200-99523400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr4:99519400-99522600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr4:99519800-99522600	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:99521000-99522600	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr4:99521000-99524800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:99521000-99524800	Weak transcription	HSMM	muscle
8	chr4:99521200-99522600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:99521200-99522800	Weak transcription	NH-A	brain
10	chr4:99521400-99524600	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr4:99521400-99525000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:99522000-99522600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr4:99522000-99523200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr4:99522000-99525200	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr4:99522200-99522600	ZNF genes & repeats	Fetal Brain Female	brain
16	chr4:99522200-99532200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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