Variant report
| Variant | rs10029988 |
|---|---|
| Chromosome Location | chr4:125671714-125671715 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:125632600..125635495-chr4:125669372..125672069,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151458 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:5)
| rs_ID | r2[population] |
|---|---|
| rs10020316 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12186314 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28666466 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs313996 | 0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs313998 | 0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879882 | chr4:125662969-125703938 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3448689 | chr4:125671052-125673050 | Weak transcription Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv8426 | chr4:125671605-125672216 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv3526159 | chr4:125671616-125672175 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | esv3466178 | chr4:125671618-125672157 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3526160 | chr4:125671645-125672145 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 7 | esv3526158 | chr4:125671655-125672112 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 8 | esv2782 | chr4:125671666-125672120 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 9 | esv3466177 | chr4:125671668-125672122 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 10 | esv3466179 | chr4:125671676-125672123 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 11 | esv3466181 | chr4:125671691-125672079 | Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:125668000-125672000 | Weak transcription | Aorta | Aorta |
