Variant report

Variant	rs10031752
Chromosome Location	chr4:86969279-86969280
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10002407	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10023731	0.87[ASN][1000 genomes]
rs10027225	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11929863	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1201	0.92[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12502934	0.87[ASN][1000 genomes]
rs12512583	0.88[ASN][1000 genomes]
rs13103374	0.94[ASN][1000 genomes]
rs13112959	0.88[ASN][1000 genomes]
rs13353771	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1469869	0.91[ASN][1000 genomes]
rs1898248	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1898249	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1946733	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2118044	0.91[ASN][1000 genomes]
rs2282596	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2282597	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2282598	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2589506	0.90[ASN][1000 genomes]
rs2589515	0.90[ASN][1000 genomes]
rs2589516	0.90[ASN][1000 genomes]
rs28485608	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28516651	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs28865277	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs34998174	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35823399	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3755970	0.83[AFR][1000 genomes]
rs3775167	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775170	0.96[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775184	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6822410	0.85[ASN][1000 genomes]
rs6840318	0.91[ASN][1000 genomes]
rs9307015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs958	0.96[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9884282	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9884770	0.87[ASN][1000 genomes]
rs9995879	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv998531	chr4:86966103-86980077	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv511259	chr4:86966327-86983232	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
3	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:86949200-86988600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:86955000-86985000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr4:86955200-86971000	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:86955200-87003800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr4:86956200-86969600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:86958200-86975600	Weak transcription	Fetal Brain Female	brain
10	chr4:86958400-86992600	Weak transcription	Fetal Kidney	kidney
11	chr4:86961200-86979400	Weak transcription	Fetal Stomach	stomach
12	chr4:86961200-86981000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:86963600-86974400	Weak transcription	Fetal Lung	lung
14	chr4:86963600-86988800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:86965200-86976200	Weak transcription	Brain Anterior Caudate	brain
16	chr4:86965200-86985800	Weak transcription	Adipose Nuclei	Adipose
17	chr4:86965200-86987000	Weak transcription	Brain Substantia Nigra	brain
18	chr4:86967200-86971200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr4:86968000-86969600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:86968400-86970000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr4:86968800-86970400	Enhancers	NHDF-Ad	bronchial
22	chr4:86969000-86969800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr4:86969000-86972000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr4:86969200-86969600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr4:86969200-86969800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr4:86969200-86972600	Enhancers	HMEC	breast

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