Variant report

Variant	rs10032241
Chromosome Location	chr4:106474078-106474079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106473010..106475476-chr4:106482085..106484725,2	MCF-7	breast:
2	chr4:106452636..106454650-chr4:106472579..106474364,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249885	Chromatin interaction
ENSG00000250922	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10001434	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10001614	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10007801	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10014771	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10016616	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10024863	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10025663	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470907	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10488942	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938316	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1490596	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1490597	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1490598	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17035687	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17035704	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17035711	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2107046	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2158202	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28380268	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28422499	0.89[EUR][1000 genomes]
rs28444199	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28462162	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28634484	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28678184	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28687111	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28707788	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28754790	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3948725	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56068525	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6816893	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs6817444	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6825245	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6834374	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6858204	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs730207	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs730208	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs730850	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7661571	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv1005011	chr4:106461690-106496019	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1013019	chr4:106461690-106501412	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv524424	chr4:106466128-106491511	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv461610	chr4:106466128-106491511	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv595008	chr4:106466128-106491511	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv517837	chr4:106466588-106502513	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106470000-106476600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr4:106471400-106474200	Enhancers	HMEC	breast
3	chr4:106471600-106474200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:106471600-106474200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr4:106471800-106474200	Enhancers	NHEK	skin
6	chr4:106472200-106477600	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr4:106472800-106474600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr4:106472800-106474800	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr4:106473000-106474600	Active TSS	Colonic Mucosa	Colon
10	chr4:106473000-106475400	Active TSS	Pancreas	Pancrea
11	chr4:106473200-106474200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:106473200-106474200	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr4:106473200-106474200	Enhancers	Placenta	Placenta
14	chr4:106473200-106474600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
15	chr4:106473200-106474600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr4:106473200-106475000	Active TSS	Rectal Smooth Muscle	rectum
17	chr4:106473400-106474200	ZNF genes & repeats	Lung	lung
18	chr4:106473400-106474800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr4:106473400-106475200	Active TSS	Fetal Stomach	stomach
20	chr4:106473400-106476400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:106473600-106474200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:106473600-106474200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:106473600-106474400	Active TSS	Stomach Mucosa	stomach
24	chr4:106473600-106475600	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr4:106473600-106477400	Active TSS	Duodenum Mucosa	Duodenum
26	chr4:106473600-106477600	Active TSS	Fetal Intestine Large	intestine
27	chr4:106473600-106477600	Weak transcription	Gastric	stomach
28	chr4:106473800-106474200	Active TSS	Sigmoid Colon	Sigmoid Colon
29	chr4:106473800-106474400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
30	chr4:106473800-106474800	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr4:106473800-106476200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:106474000-106474200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
33	chr4:106474000-106474400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr4:106474000-106474600	Active TSS	Fetal Kidney	kidney
35	chr4:106474000-106475400	Active TSS	Fetal Intestine Small	intestine
36	chr4:106474000-106476200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr4:106474000-106477400	Weak transcription	Fetal Lung	lung

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