Variant report

Variant	rs10032428
Chromosome Location	chr4:99544309-99544310
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99537720..99540148-chr4:99541688..99544622,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs6842722	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594940	chr4:99542475-99573350	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99523000-99545000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:99532600-99545400	Weak transcription	HMEC	breast
3	chr4:99535600-99554200	Enhancers	Brain Substantia Nigra	brain
4	chr4:99536200-99545800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr4:99537600-99544800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:99539000-99546400	Weak transcription	Fetal Thymus	thymus
7	chr4:99539000-99547200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:99539200-99545400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr4:99539200-99546000	Weak transcription	Fetal Heart	heart
10	chr4:99539200-99546600	Weak transcription	HSMM	muscle
11	chr4:99539200-99547200	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:99539200-99547200	Weak transcription	Right Atrium	heart
13	chr4:99539200-99547600	Weak transcription	Gastric	stomach
14	chr4:99539200-99547600	Weak transcription	Left Ventricle	heart
15	chr4:99539200-99547600	Weak transcription	Right Ventricle	heart
16	chr4:99539200-99547800	Weak transcription	Fetal Stomach	stomach
17	chr4:99540000-99547400	Weak transcription	Fetal Lung	lung
18	chr4:99541800-99546800	Weak transcription	Fetal Brain Female	brain
19	chr4:99542000-99544400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr4:99542000-99544800	Weak transcription	NH-A	brain
21	chr4:99542000-99546400	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr4:99542000-99546400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr4:99542000-99547200	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr4:99542000-99547200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr4:99542000-99547200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr4:99542200-99544400	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr4:99542200-99544600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr4:99542200-99546600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr4:99542200-99547600	Weak transcription	Fetal Brain Male	brain
30	chr4:99542400-99544800	Weak transcription	Primary T cells from cord blood	blood
31	chr4:99542400-99545200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:99542400-99546600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr4:99542400-99547200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr4:99542600-99546400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:99543200-99547200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr4:99543400-99547200	Enhancers	NHDF-Ad	bronchial
37	chr4:99543400-99547200	Enhancers	NHLF	lung
38	chr4:99543400-99549400	Enhancers	Brain Hippocampus Middle	brain
39	chr4:99543400-99550000	Enhancers	Brain Cingulate Gyrus	brain
40	chr4:99543600-99544400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:99543600-99545000	Enhancers	HUES64 Cell Line	embryonic stem cell
42	chr4:99543600-99545200	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr4:99543600-99546000	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr4:99543600-99546400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:99543600-99547200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr4:99543800-99544400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr4:99543800-99544400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr4:99543800-99545000	Enhancers	Brain Angular Gyrus	brain
49	chr4:99543800-99545200	Enhancers	ES-I3 Cell Line	embryonic stem cell
50	chr4:99543800-99545400	Enhancers	iPS-18 Cell Line	embryonic stem cell

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