Variant report

Variant	rs10033224
Chromosome Location	chr4:7200070-7200071
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:7199149..7200826-chr4:7208217..7211215,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10003000	1.00[AMR][1000 genomes]
rs10014601	1.00[AMR][1000 genomes]
rs10026259	1.00[AMR][1000 genomes]
rs28368243	1.00[AMR][1000 genomes]
rs28653657	1.00[AMR][1000 genomes]
rs28822684	1.00[AMR][1000 genomes]
rs9998707	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34033	chr4:6973270-7390621	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2757919	chr4:6988148-7269901	Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2759221	chr4:6988148-7269901	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv428436	chr4:6988148-7269901	Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv829850	chr4:7112509-7314016	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
6	nsv461194	chr4:7154743-7219933	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv593561	chr4:7154743-7219933	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv432556	chr4:7174993-7391948	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
9	nsv461197	chr4:7183984-7222362	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv593563	chr4:7183984-7222362	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv878540	chr4:7186257-7231782	Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv593564	chr4:7197393-7222781	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:7195600-7201200	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr4:7195600-7208000	Weak transcription	Right Atrium	heart
3	chr4:7196200-7200800	Enhancers	NH-A	brain
4	chr4:7196200-7207800	Weak transcription	Psoas Muscle	Psoas
5	chr4:7196800-7201200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:7196800-7202600	Weak transcription	Colon Smooth Muscle	Colon
7	chr4:7197000-7207800	Weak transcription	Esophagus	oesophagus
8	chr4:7197200-7202600	Weak transcription	Rectal Smooth Muscle	rectum
9	chr4:7198200-7202400	Weak transcription	HSMM	muscle
10	chr4:7198200-7202600	Weak transcription	Fetal Heart	heart
11	chr4:7198200-7203800	Weak transcription	Brain Germinal Matrix	brain
12	chr4:7198800-7200200	Enhancers	Fetal Thymus	thymus
13	chr4:7198800-7201400	Enhancers	Fetal Muscle Leg	muscle
14	chr4:7198800-7203200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:7198800-7203600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:7199000-7200200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr4:7199000-7200400	Bivalent Enhancer	Fetal Stomach	stomach
18	chr4:7199200-7200200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr4:7199200-7200200	Enhancers	Brain Substantia Nigra	brain
20	chr4:7199200-7203600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:7199200-7204000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr4:7199400-7200200	Enhancers	Fetal Lung	lung
23	chr4:7199400-7201800	Enhancers	Ovary	ovary
24	chr4:7199400-7204000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr4:7199600-7200200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
26	chr4:7199600-7200200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr4:7199600-7200200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr4:7199600-7200400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:7199600-7200400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr4:7199600-7200400	Enhancers	HSMMtube	muscle
31	chr4:7199600-7200600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr4:7199600-7204000	Weak transcription	Hela-S3	cervix
33	chr4:7199800-7200400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
34	chr4:7199800-7201600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:7199800-7203600	Weak transcription	Brain Anterior Caudate	brain
36	chr4:7199800-7203800	Weak transcription	A549	lung
37	chr4:7199800-7206400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr4:7199800-7208000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr4:7200000-7200200	Weak transcription	HMEC	breast
40	chr4:7200000-7200600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr4:7200000-7203000	Weak transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links