Variant report

Variant	rs10033243
Chromosome Location	chr4:103741940-103741941
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:103680657..103683210-chr4:103740913..103743841,3	MCF-7	breast:
2	chr4:103740711..103743615-chr4:103789867..103792849,2	MCF-7	breast:
3	chr4:103736995..103756245-chr4:103778393..103800311,117	K562	blood:
4	chr4:103713070..103714725-chr4:103740099..103742111,2	K562	blood:
5	chr4:103741330..103752134-chr4:103778393..103796398,92	K562	blood:

Variant related genes	Relation type
ENSG00000109332	Chromatin interaction
ENSG00000109323	Chromatin interaction
ENSG00000145354	Chromatin interaction
ENSG00000238948	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10005010	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10025625	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap]
rs17033384	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[JPT][hapmap];0.87[YRI][hapmap]
rs17256589	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs2023532	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2198199	0.83[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs3774997	0.94[CEU][hapmap];0.90[CHB][hapmap];0.87[YRI][hapmap]
rs3960787	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594957	chr4:103728010-103870091	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103713000-103744400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:103724400-103745800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:103725600-103745000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:103728400-103744400	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:103732600-103744400	Weak transcription	Brain Germinal Matrix	brain
6	chr4:103732800-103745000	Weak transcription	Lung	lung
7	chr4:103732800-103746400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:103732800-103746400	Weak transcription	Esophagus	oesophagus
9	chr4:103733400-103743200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr4:103734600-103745600	Weak transcription	Fetal Stomach	stomach
11	chr4:103734800-103744800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr4:103735600-103746200	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr4:103736000-103746600	Weak transcription	Pancreas	Pancrea
14	chr4:103736600-103742200	Enhancers	Brain Angular Gyrus	brain
15	chr4:103736600-103744400	Genic enhancers	HSMM	muscle
16	chr4:103736800-103743600	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
17	chr4:103737200-103742000	Transcr. at gene 5' and 3'	GM12878-XiMat	blood
18	chr4:103737200-103742200	Genic enhancers	A549	lung
19	chr4:103737200-103742800	Genic enhancers	Dnd41	blood
20	chr4:103737200-103745600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr4:103737400-103744800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr4:103737600-103742200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:103737600-103744200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:103737600-103744400	Enhancers	Colon Smooth Muscle	Colon
25	chr4:103737800-103743200	Enhancers	Adipose Nuclei	Adipose
26	chr4:103738000-103744200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:103738000-103744600	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr4:103738400-103743200	Weak transcription	Spleen	Spleen
29	chr4:103738400-103743600	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr4:103738400-103746600	Weak transcription	Gastric	stomach
31	chr4:103738800-103742400	Genic enhancers	Osteobl	bone
32	chr4:103739000-103742000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:103739000-103744400	Enhancers	Brain Anterior Caudate	brain
34	chr4:103739200-103742000	Enhancers	Stomach Mucosa	stomach
35	chr4:103739400-103742400	Enhancers	NHLF	lung
36	chr4:103739400-103744200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
37	chr4:103739400-103744200	Enhancers	Rectal Mucosa Donor 31	rectum
38	chr4:103739400-103744800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:103739400-103745600	Weak transcription	Placenta	Placenta
40	chr4:103739600-103742800	Genic enhancers	HUES6 Cell Line	embryonic stem cell
41	chr4:103739600-103743200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr4:103739600-103744200	Enhancers	Rectal Smooth Muscle	rectum
43	chr4:103739600-103744400	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:103739800-103742000	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr4:103739800-103742400	Enhancers	Fetal Intestine Large	intestine
46	chr4:103739800-103743200	Weak transcription	Hela-S3	cervix
47	chr4:103740000-103742000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr4:103740200-103742400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr4:103740200-103742400	Weak transcription	HSMMtube	muscle
50	chr4:103740200-103742600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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