Variant report

Variant	rs10034005
Chromosome Location	chr4:101943242-101943243
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:101942660..101944164-chr4:101947986..101950030,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16996706	0.85[AMR][1000 genomes]
rs17030724	0.85[AMR][1000 genomes]
rs55681157	0.85[AMR][1000 genomes]
rs55705218	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73833206	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931418	chr4:101500167-102443207	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:101931200-101958000	Weak transcription	Ovary	ovary
2	chr4:101936200-101967800	Weak transcription	Fetal Kidney	kidney
3	chr4:101937400-101943400	Enhancers	Primary T helper cells PMA-I stimulated	--
4	chr4:101938200-101943400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr4:101940000-101943600	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr4:101940200-101943400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:101940200-101943800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:101940200-101943800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr4:101940200-101944000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:101940200-101944000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:101940200-101944200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr4:101940400-101944000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr4:101940600-101943400	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr4:101940600-101943600	Weak transcription	Primary B cells from cord blood	blood
15	chr4:101940600-101943600	Enhancers	HMEC	breast
16	chr4:101940600-101943800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr4:101940600-101944000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:101940800-101943400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr4:101940800-101943800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr4:101940800-101943800	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:101940800-101943800	Weak transcription	Pancreas	Pancrea
22	chr4:101940800-101944000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr4:101940800-101958200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr4:101941000-101943400	Enhancers	H1 Cell Line	embryonic stem cell
25	chr4:101941000-101943600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr4:101941000-101943800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:101941000-101943800	Weak transcription	Fetal Intestine Large	intestine
28	chr4:101941000-101944000	Enhancers	NH-A	brain
29	chr4:101941000-101960200	Weak transcription	Colonic Mucosa	Colon
30	chr4:101941200-101971000	Weak transcription	Psoas Muscle	Psoas
31	chr4:101941200-102000200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:101941200-102035600	Weak transcription	Fetal Intestine Small	intestine
33	chr4:101941600-101959400	Weak transcription	HepG2	liver
34	chr4:101941800-101943400	Enhancers	Colon Smooth Muscle	Colon
35	chr4:101941800-101943800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr4:101941800-101944000	Enhancers	A549	lung
37	chr4:101941800-101944400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr4:101941800-101951400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:101941800-101953000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr4:101941800-101959200	Weak transcription	Left Ventricle	heart
41	chr4:101942000-101943400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr4:101942000-101943600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr4:101942000-101943600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:101942000-101943800	Enhancers	HSMM	muscle
45	chr4:101942000-101944000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:101942000-101944000	Enhancers	Aorta	Aorta
47	chr4:101942000-101944000	Enhancers	NHLF	lung
48	chr4:101942000-101944200	Enhancers	Osteobl	bone
49	chr4:101942000-101944400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:101942000-101944400	Enhancers	NHDF-Ad	bronchial

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