Variant report

Variant	rs10034311
Chromosome Location	chr4:107288647-107288648
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10516532	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830029	chr4:107203096-107353483	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1008963	chr4:107282656-107384924	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:107270800-107290600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr4:107286200-107288800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:107287200-107290600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:107287400-107290600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:107287400-107290800	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr4:107287600-107288800	Enhancers	NH-A	brain
7	chr4:107287600-107290600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:107287800-107290400	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr4:107287800-107290400	Weak transcription	HUVEC	blood vessel
10	chr4:107287800-107290600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:107287800-107290600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:107287800-107290600	Weak transcription	Osteobl	bone
13	chr4:107287800-107290800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr4:107288400-107288800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr4:107288400-107290400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:107288400-107290600	Weak transcription	HSMM	muscle
17	chr4:107288600-107289600	Weak transcription	NHDF-Ad	bronchial
18	chr4:107288600-107290200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr4:107288600-107290800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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