Variant report

Variant	rs10035563
Chromosome Location	chr5:79563831-79563832
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:79556019..79559236-chr5:79560726..79564339,3	K562	blood:
2	chr5:79550028..79553587-chr5:79560217..79564792,7	MCF-7	breast:
3	chr5:79549648..79554131-chr5:79561074..79564887,8	MCF-7	breast:
4	chr5:79559351..79560871-chr5:79561868..79564260,2	K562	blood:
5	chr5:79553026..79559305-chr5:79561133..79565052,9	K562	blood:

Variant related genes	Relation type
ENSG00000164300	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10041270	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10051472	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10065865	0.90[ASN][1000 genomes]
rs10462573	0.89[ASN][1000 genomes]
rs1126176	0.86[ASN][1000 genomes]
rs11960022	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55649733	0.99[ASN][1000 genomes]
rs56850090	0.89[ASN][1000 genomes]
rs6872359	0.94[ASN][1000 genomes]
rs7707520	0.99[ASN][1000 genomes]
rs9293807	0.98[ASN][1000 genomes]
rs9293808	0.98[ASN][1000 genomes]
rs9293809	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432748	chr5:79300434-79577760	Enhancers Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv948807	chr5:79549207-79805765	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:79553400-79577800	Weak transcription	Right Atrium	heart
2	chr5:79553600-79568200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:79554200-79564800	Weak transcription	Fetal Stomach	stomach
4	chr5:79554600-79564800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:79560800-79565400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr5:79561600-79569800	Enhancers	Primary T cells from cord blood	blood
7	chr5:79562000-79564600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr5:79562400-79566000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr5:79562600-79564800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:79562800-79564800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:79562800-79565000	Weak transcription	Fetal Kidney	kidney
12	chr5:79563400-79564000	Enhancers	Thymus	Thymus
13	chr5:79563600-79569200	Enhancers	Primary T cells fromperipheralblood	blood
14	chr5:79563800-79564000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:79563800-79564000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:79563800-79564000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
17	chr5:79563800-79564000	Enhancers	Placenta	Placenta
18	chr5:79563800-79564000	Enhancers	Rectal Mucosa Donor 29	rectum
19	chr5:79563800-79564200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr5:79563800-79567800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr5:79563800-79567800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:79563800-79567800	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr5:79563800-79568000	Enhancers	Primary T killer memory cells from peripheral blood	blood
24	chr5:79563800-79569400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr5:79563800-79569400	Enhancers	Fetal Thymus	thymus

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