Variant report

Variant	rs10036010
Chromosome Location	chr5:52876423-52876424
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:52874283..52876736-chr5:52878456..52881644,3	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs1593053	0.87[ASN][1000 genomes]
rs28515477	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28708487	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28736800	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35204933	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56129546	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72748120	0.82[ASN][1000 genomes]
rs72748124	0.82[ASN][1000 genomes]
rs72748126	0.87[ASN][1000 genomes]
rs72748128	0.87[ASN][1000 genomes]
rs72748131	0.87[ASN][1000 genomes]
rs72750104	0.87[ASN][1000 genomes]
rs72750115	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750116	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750118	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750119	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750120	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750121	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750122	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750123	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750126	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750127	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750130	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750131	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750134	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72750140	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750144	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72750148	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751827	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751844	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751846	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751847	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751863	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751866	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751867	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72751871	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753636	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753638	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753639	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753641	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753648	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753652	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753656	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753660	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753662	0.93[EUR][1000 genomes]
rs72753664	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72753670	1.00[ASN][1000 genomes]
rs72753671	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72753677	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72753682	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72753684	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72753688	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72753689	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72753691	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72755368	0.93[EUR][1000 genomes]
rs72755378	0.93[EUR][1000 genomes]
rs72755379	0.86[EUR][1000 genomes]
rs72755392	0.93[EUR][1000 genomes]
rs72755393	0.88[EUR][1000 genomes]
rs72757303	0.88[EUR][1000 genomes]
rs72757306	0.88[EUR][1000 genomes]
rs72757373	0.88[EUR][1000 genomes]
rs72757381	0.88[EUR][1000 genomes]
rs72757382	0.88[EUR][1000 genomes]
rs72757387	0.88[EUR][1000 genomes]
rs72757388	0.88[EUR][1000 genomes]
rs72757396	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1032632	chr5:52667145-53655624	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv880868	chr5:52799618-53002783	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv880689	chr5:52847995-53002783	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52857800-52883000	Weak transcription	Hela-S3	cervix
2	chr5:52857800-52884000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:52857800-52892800	Weak transcription	Primary B cells from cord blood	blood
4	chr5:52857800-52898800	Weak transcription	HSMM	muscle
5	chr5:52858000-52899800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr5:52858000-52900400	Weak transcription	Fetal Kidney	kidney
7	chr5:52858200-52880400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr5:52858200-52885000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr5:52858200-52897200	Weak transcription	NHEK	skin
10	chr5:52858400-52895000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:52858400-52899800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr5:52860000-52909000	Weak transcription	Small Intestine	intestine
13	chr5:52860200-52885600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr5:52860600-52884800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr5:52861600-52894600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:52865000-52900400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:52865200-52885200	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr5:52865600-52883400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr5:52865600-52898400	Weak transcription	Fetal Lung	lung
20	chr5:52865600-52899800	Weak transcription	Primary hematopoietic stem cells	blood
21	chr5:52866200-52883400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:52866400-52884200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:52867600-52888400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:52868200-52885200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr5:52868400-52882000	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr5:52869600-52896000	Weak transcription	Fetal Stomach	stomach
27	chr5:52870200-52892000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr5:52871000-52881400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr5:52871200-52877800	Weak transcription	Fetal Muscle Leg	muscle
30	chr5:52872000-52892800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr5:52872200-52885000	Weak transcription	Primary T cells from cord blood	blood
32	chr5:52873000-52884800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr5:52873000-52887000	Weak transcription	Brain Hippocampus Middle	brain
34	chr5:52873000-52889200	Weak transcription	A549	lung
35	chr5:52873000-52900400	Weak transcription	Gastric	stomach
36	chr5:52873200-52899000	Weak transcription	Right Atrium	heart
37	chr5:52873400-52876800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr5:52873400-52878200	Weak transcription	Right Ventricle	heart
39	chr5:52873400-52885400	Weak transcription	Left Ventricle	heart
40	chr5:52873400-52889800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr5:52874400-52884000	Weak transcription	Fetal Intestine Small	intestine
42	chr5:52874400-52885200	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr5:52874400-52888400	Weak transcription	Fetal Heart	heart
44	chr5:52874600-52878000	Weak transcription	Ovary	ovary
45	chr5:52874600-52889800	Weak transcription	HepG2	liver
46	chr5:52874800-52877200	Weak transcription	Rectal Smooth Muscle	rectum
47	chr5:52875000-52878400	Weak transcription	Colon Smooth Muscle	Colon
48	chr5:52875000-52885400	Weak transcription	Aorta	Aorta
49	chr5:52875000-52900000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr5:52875400-52899200	Weak transcription	Monocytes-CD14+_RO01746	blood

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