Variant report

Variant	rs10036031
Chromosome Location	chr5:119703382-119703383
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10051546	0.85[EUR][1000 genomes]
rs10056249	0.85[EUR][1000 genomes]
rs10478461	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10478462	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13179086	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13361317	0.85[EUR][1000 genomes]
rs13436530	0.87[EUR][1000 genomes]
rs17146599	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17164648	0.83[EUR][1000 genomes]
rs28673517	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28786120	0.81[EUR][1000 genomes]
rs57783585	0.84[EUR][1000 genomes]
rs6883355	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs714809	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532200	chr5:119317901-120102513	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882786	chr5:119615110-119714817	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1018955	chr5:119679918-119802014	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv527509	chr5:119697716-119724069	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:119698400-119703600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr5:119702000-119703800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:119702000-119703800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:119702200-119703800	Weak transcription	HMEC	breast
5	chr5:119702200-119704000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:119702400-119707800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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