Variant report

Variant	rs10036388
Chromosome Location	chr5:177558929-177558930
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:177556499..177561085-chr5:177629309..177633856,7	K562	blood:
2	chr5:177556214..177559808-chr5:177575521..177582645,10	K562	blood:
3	chr5:177556514..177559685-chr5:177630098..177633052,4	K562	blood:
4	chr5:177556060..177559207-chr5:177571980..177574313,5	K562	blood:
5	chr5:177556060..177559089-chr5:177572421..177574313,3	K562	blood:
6	chr5:177556823..177560281-chr5:177564764..177567288,3	K562	blood:
7	chr5:177556550..177559096-chr5:177579482..177582645,4	K562	blood:
8	chr5:177555803..177560183-chr5:177628551..177633825,8	MCF-7	breast:
9	chr5:176923371..176925329-chr5:177557854..177560543,2	MCF-7	breast:
10	chr5:177558100..177560422-chr6:27113137..27116043,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000145916	Chromatin interaction
ENSG00000184825	Chromatin interaction
ENSG00000145912	Chromatin interaction
ENSG00000196923	Chromatin interaction
ENSG00000197903	Chromatin interaction
ENSG00000197451	Chromatin interaction
ENSG00000265565	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10903275	0.87[GIH][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs4590193	0.88[CHB][hapmap]
rs7446073	0.88[CHB][hapmap]
rs7710096	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030383	chr5:177310325-177571254	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv948342	chr5:177384542-178168737	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	141 gene(s)	inside rSNPs	diseases
3	nsv1021198	chr5:177386267-177611648	Enhancers Bivalent/Poised TSS Flanking Active TSS Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv1029398	chr5:177502106-178070654	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	136 gene(s)	inside rSNPs	diseases
5	nsv462567	chr5:177505021-177572927	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv471058	chr5:177505021-177572927	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv600392	chr5:177505021-177572927	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv1019404	chr5:177507080-177859089	Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	126 gene(s)	inside rSNPs	diseases
9	nsv883190	chr5:177532201-177620189	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
10	nsv883192	chr5:177535370-177564346	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
11	nsv600394	chr5:177549491-177608195	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
12	esv3424416	chr5:177556571-177559319	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:177556800-177559600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:177557000-177559000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:177557200-177559000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr5:177557200-177559000	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr5:177557200-177559000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
6	chr5:177557200-177559000	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr5:177557200-177559000	Active TSS	Fetal Stomach	stomach
8	chr5:177557200-177559000	Active TSS	A549	lung
9	chr5:177557200-177559000	Active TSS	HSMM	muscle
10	chr5:177557200-177559200	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr5:177557200-177559200	Active TSS	HUES64 Cell Line	embryonic stem cell
12	chr5:177557200-177559200	Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr5:177557200-177559200	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr5:177557200-177559200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:177557200-177559600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr5:177557400-177559000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:177557400-177559000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:177557400-177559000	Active TSS	Muscle Satellite Cultured Cells	--
19	chr5:177557400-177559000	Active TSS	NHDF-Ad	bronchial
20	chr5:177557400-177559200	Active TSS	iPS-20b Cell Line	embryonic stem cell
21	chr5:177557400-177559200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:177557400-177559400	Active TSS	Esophagus	oesophagus
23	chr5:177557800-177559600	Active TSS	Colonic Mucosa	Colon
24	chr5:177558200-177559000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr5:177558200-177559000	Flanking Active TSS	Fetal Muscle Leg	muscle
26	chr5:177558200-177559000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr5:177558200-177559200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr5:177558400-177559000	Flanking Active TSS	Primary T cells from cord blood	blood
29	chr5:177558400-177559000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr5:177558400-177559000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
31	chr5:177558400-177559000	Flanking Active TSS	Fetal Muscle Trunk	muscle
32	chr5:177558400-177559000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
33	chr5:177558400-177559000	Flanking Active TSS	HSMMtube	muscle
34	chr5:177558400-177559200	Flanking Active TSS	Dnd41	blood
35	chr5:177558400-177559600	Enhancers	Spleen	Spleen
36	chr5:177558600-177559000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr5:177558600-177559000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr5:177558600-177559000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr5:177558600-177559000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr5:177558600-177559000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:177558600-177559000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr5:177558600-177559000	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr5:177558600-177559000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:177558600-177559000	Flanking Active TSS	Brain Angular Gyrus	brain
45	chr5:177558600-177559000	Flanking Active TSS	Brain Anterior Caudate	brain
46	chr5:177558600-177559000	Flanking Active TSS	Brain Cingulate Gyrus	brain
47	chr5:177558600-177559000	Flanking Active TSS	Brain Hippocampus Middle	brain
48	chr5:177558600-177559000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
49	chr5:177558600-177559000	Flanking Active TSS	Brain Substantia Nigra	brain
50	chr5:177558600-177559000	Flanking Active TSS	Colon Smooth Muscle	Colon

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