Variant report

Variant	rs10036581
Chromosome Location	chr5:112654640-112654641
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:112654629-112654650	Gliobla	brain:	n/a	n/a

Variant related genes	Relation type
ENSG00000232633	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10057210	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10067046	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10072511	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10076501	0.88[ASN][1000 genomes]
rs1038918	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10900684	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11241200	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11748642	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11948072	0.88[ASN][1000 genomes]
rs13153071	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1517206	0.88[ASN][1000 genomes]
rs1850408	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2165928	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2416310	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4705812	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4705813	0.81[AMR][1000 genomes]
rs6594700	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6869097	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6873400	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6873755	0.90[ASN][1000 genomes]
rs6875238	0.81[AMR][1000 genomes]
rs6894434	0.88[ASN][1000 genomes]
rs7735247	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv599396	chr5:112408944-112853189	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv882718	chr5:112519471-112674376	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv882719	chr5:112568212-112706511	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024747	chr5:112592710-112679373	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1018078	chr5:112615220-112657404	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv949165	chr5:112615626-112730216	Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:112648800-112666600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:112649200-112655200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:112653000-112673600	Weak transcription	Fetal Kidney	kidney
4	chr5:112654000-112655000	Weak transcription	Fetal Brain Male	brain

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