Variant report

Variant	rs10037291
Chromosome Location	chr5:16743042-16743043
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr5:16743025-16743485	HepG2	liver:	n/a	n/a
2	FOXA1	chr5:16743038-16743517	HepG2	liver:	n/a	n/a
3	POLR2A	chr5:16742982-16743654	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
MYO10	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10043510	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10051558	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10051930	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10057142	0.81[EUR][1000 genomes]
rs10077298	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs13359146	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60500565	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6896958	0.94[EUR][1000 genomes]
rs7712627	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7712637	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7729830	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7729861	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7729975	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7730280	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7730837	0.95[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9312925	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869660	chr5:16651289-16766428	Genic enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv880373	chr5:16710572-16785604	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1025225	chr5:16714512-17234866	Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv520128	chr5:16737513-16746784	Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16730800-16744400	Weak transcription	HSMM	muscle
2	chr5:16734600-16744400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:16735200-16746600	Weak transcription	HSMMtube	muscle
4	chr5:16736400-16781400	Weak transcription	Esophagus	oesophagus
5	chr5:16736800-16756600	Weak transcription	Ovary	ovary
6	chr5:16736800-16758200	Weak transcription	Spleen	Spleen
7	chr5:16736800-16761200	Weak transcription	Hela-S3	cervix
8	chr5:16736800-16761800	Weak transcription	Colonic Mucosa	Colon
9	chr5:16736800-16762400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr5:16737000-16780400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr5:16738000-16743800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:16738000-16746400	Weak transcription	Osteobl	bone
13	chr5:16738400-16748800	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:16738600-16744400	Weak transcription	Gastric	stomach
15	chr5:16738600-16746800	Weak transcription	Fetal Intestine Large	intestine
16	chr5:16739200-16744400	Weak transcription	Pancreas	Pancrea
17	chr5:16739200-16750600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr5:16739400-16758000	Weak transcription	Stomach Mucosa	stomach
19	chr5:16740400-16747200	Weak transcription	Fetal Intestine Small	intestine
20	chr5:16740400-16748200	Weak transcription	Right Ventricle	heart
21	chr5:16740600-16744200	Enhancers	HepG2	liver
22	chr5:16741000-16755800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr5:16741000-16758400	Weak transcription	Aorta	Aorta
24	chr5:16741200-16743200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr5:16741200-16782000	Weak transcription	Rectal Smooth Muscle	rectum
26	chr5:16741400-16744400	Weak transcription	A549	lung
27	chr5:16741400-16754600	Weak transcription	Fetal Kidney	kidney
28	chr5:16741800-16743400	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr5:16741800-16743600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr5:16741800-16744800	Genic enhancers	HUVEC	blood vessel
31	chr5:16741800-16761400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr5:16742000-16743400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr5:16742000-16743600	Enhancers	NH-A	brain
34	chr5:16742000-16743800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:16742000-16745800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr5:16742000-16746600	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr5:16742000-16747000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr5:16742200-16743400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr5:16742200-16744400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
40	chr5:16742200-16744400	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr5:16742200-16746800	Weak transcription	HMEC	breast
42	chr5:16742200-16751800	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr5:16742200-16752000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr5:16742200-16752600	Weak transcription	NHEK	skin
45	chr5:16742400-16743200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr5:16742400-16743400	Enhancers	Cortex derived primary cultured neurospheres	brain
47	chr5:16742400-16743400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr5:16742400-16743800	Enhancers	H1 Cell Line	embryonic stem cell
49	chr5:16742400-16744000	Enhancers	iPS-15b Cell Line	embryonic stem cell
50	chr5:16742400-16744600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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