Variant report

Variant	rs10038299
Chromosome Location	chr5:58456872-58456873
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10035719	0.81[ASN][1000 genomes]
rs10039838	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10085037	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10085076	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1105577	0.85[ASN][1000 genomes]
rs16889280	0.85[ASN][1000 genomes]
rs55730818	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55998224	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6877743	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72764072	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv881702	chr5:58432413-58474854	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58439000-58484000	Weak transcription	Fetal Kidney	kidney
2	chr5:58447600-58464000	Weak transcription	Right Ventricle	heart
3	chr5:58447600-58465200	Weak transcription	Right Atrium	heart
4	chr5:58447600-58473200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:58447600-58473400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr5:58447600-58479600	Weak transcription	Left Ventricle	heart
7	chr5:58449200-58457000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr5:58449200-58457600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr5:58449400-58473600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:58449600-58457000	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr5:58449800-58489400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:58450000-58460200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:58451400-58459600	Weak transcription	Fetal Lung	lung
14	chr5:58452000-58457000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr5:58452200-58464000	Weak transcription	Hela-S3	cervix
16	chr5:58452800-58458200	Genic enhancers	A549	lung
17	chr5:58453400-58457000	Weak transcription	Primary T cells from cord blood	blood
18	chr5:58454000-58459400	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr5:58454200-58465000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr5:58454400-58472800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr5:58454800-58457000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr5:58454800-58459800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:58454800-58459800	Weak transcription	HSMM	muscle
24	chr5:58455200-58473400	Weak transcription	Fetal Muscle Leg	muscle
25	chr5:58455800-58473600	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr5:58456000-58459600	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr5:58456000-58460600	Weak transcription	Colon Smooth Muscle	Colon
28	chr5:58456400-58458200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr5:58456400-58458400	Enhancers	Fetal Intestine Large	intestine
30	chr5:58456600-58464000	Weak transcription	Psoas Muscle	Psoas
31	chr5:58456800-58459000	Enhancers	Fetal Thymus	thymus

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