Variant report

Variant	rs10040110
Chromosome Location	chr5:107313779-107313780
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10077141	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4957733	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6596762	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6889898	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6896080	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9328026	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9328027	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs967489	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107296200-107321000	Weak transcription	Primary T cells from cord blood	blood
2	chr5:107302400-107313800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr5:107302400-107334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:107304200-107314200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr5:107308400-107315400	Weak transcription	Fetal Lung	lung
6	chr5:107309000-107314000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr5:107309000-107318800	Weak transcription	Left Ventricle	heart
8	chr5:107311200-107314200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr5:107311400-107314600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:107312400-107313800	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr5:107312400-107314000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr5:107312400-107315200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr5:107312800-107314000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr5:107312800-107317400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:107313400-107313800	Enhancers	Fetal Thymus	thymus
16	chr5:107313400-107313800	Enhancers	Gastric	stomach
17	chr5:107313400-107313800	Enhancers	Stomach Mucosa	stomach
18	chr5:107313400-107314000	Enhancers	Fetal Kidney	kidney
19	chr5:107313400-107314000	Enhancers	Thymus	Thymus
20	chr5:107313400-107316200	Enhancers	Dnd41	blood
21	chr5:107313400-107317400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr5:107313600-107313800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr5:107313600-107313800	Enhancers	Lung	lung
24	chr5:107313600-107313800	Enhancers	NHEK	skin
25	chr5:107313600-107314400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr5:107313600-107314400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr5:107313600-107316200	Enhancers	Cortex derived primary cultured neurospheres	brain

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