Variant report

Variant	rs10040768
Chromosome Location	chr5:29972828-29972829
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10035792	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10036702	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10041361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10041409	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28529138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28834519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6868643	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7732091	1.00[YRI][hapmap]
rs9292349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv597760	chr5:29905803-30028447	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:29972800-29973000	Flanking Active TSS	K562	blood
2	chr5:29972800-29973200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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