Variant report

Variant	rs10041291
Chromosome Location	chr5:27702602-27702603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10045230	1.00[AMR][1000 genomes]
rs13355073	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13357741	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4552615	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73077660	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7719780	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7722688	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881286	chr5:27135351-27770554	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv880326	chr5:27193573-27743375	Transcr. at gene 5' and 3' Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv880535	chr5:27376682-27706007	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv880999	chr5:27388559-27770554	Flanking Active TSS Active TSS ZNF genes & repeats Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv880292	chr5:27560226-27846167	Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv880563	chr5:27583734-27723520	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv880655	chr5:27583734-27932380	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1031306	chr5:27646090-27786016	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv1026341	chr5:27651682-27709005	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv880702	chr5:27684515-27785156	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
11	nsv881573	chr5:27684515-27824645	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv881080	chr5:27699870-27785156	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:27702000-27703200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr5:27702000-27703200	Flanking Active TSS	Hela-S3	cervix
3	chr5:27702000-27703800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr5:27702200-27703200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
5	chr5:27702200-27703200	Enhancers	H9 Cell Line	embryonic stem cell
6	chr5:27702200-27703200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:27702200-27703200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr5:27702200-27703400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:27702200-27703600	Enhancers	NH-A	brain
10	chr5:27702400-27703400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:27702600-27702800	Flanking Active TSS	A549	lung
12	chr5:27702600-27703000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:27702600-27703000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:27702600-27703000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr5:27702600-27703000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr5:27702600-27703000	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr5:27702600-27703000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr5:27702600-27703200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr5:27702600-27703200	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr5:27702600-27703600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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