Variant report

Variant	rs10043049
Chromosome Location	chr5:178384531-178384532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10044980	0.83[ASN][1000 genomes]
rs10060764	0.92[ASN][1000 genomes]
rs10075112	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11747215	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12514348	0.90[ASN][1000 genomes]
rs2016212	0.91[ASN][1000 genomes]
rs4700752	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4700753	0.97[ASN][1000 genomes]
rs4700971	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57272473	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs903981	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600489	chr5:178368096-178430375	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1017941	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv537974	chr5:178384214-178427401	ZNF genes & repeats Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:178369000-178384800	ZNF genes & repeats	Fetal Stomach	stomach
2	chr5:178369400-178418200	ZNF genes & repeats	Fetal Brain Female	brain
3	chr5:178373200-178385800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:178375600-178385800	Weak transcription	Osteobl	bone
5	chr5:178379000-178387400	ZNF genes & repeats	Ovary	ovary
6	chr5:178380000-178393600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr5:178380800-178384800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:178381000-178384800	ZNF genes & repeats	Aorta	Aorta
9	chr5:178381400-178394200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr5:178381600-178384800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr5:178381600-178385400	ZNF genes & repeats	Left Ventricle	heart
12	chr5:178381600-178386600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr5:178382400-178384600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr5:178382400-178386000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr5:178382400-178389400	Weak transcription	HSMM	muscle
16	chr5:178382600-178389800	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr5:178383000-178384600	Weak transcription	Brain Hippocampus Middle	brain
18	chr5:178383000-178384600	Weak transcription	Gastric	stomach
19	chr5:178383000-178385200	Weak transcription	Brain Anterior Caudate	brain
20	chr5:178383000-178385200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr5:178383000-178385400	Weak transcription	Fetal Brain Male	brain
22	chr5:178383000-178389800	Weak transcription	Pancreas	Pancrea
23	chr5:178383200-178384600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:178383400-178384600	Weak transcription	Adipose Nuclei	Adipose
25	chr5:178383400-178384600	Weak transcription	Fetal Lung	lung
26	chr5:178383400-178385200	Weak transcription	Fetal Kidney	kidney
27	chr5:178383400-178394400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr5:178383600-178384600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr5:178383600-178385200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr5:178383600-178385200	Weak transcription	Right Ventricle	heart
31	chr5:178384200-178385000	ZNF genes & repeats	Fetal Muscle Leg	muscle
32	chr5:178384200-178388000	ZNF genes & repeats	Brain Germinal Matrix	brain
33	chr5:178384400-178384800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:178384400-178385600	Weak transcription	Fetal Heart	heart
35	chr5:178384400-178395600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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