Variant report

Variant	rs10043055
Chromosome Location	chr5:105590047-105590048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10036696	1.00[AMR][1000 genomes]
rs10054881	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10065422	1.00[AMR][1000 genomes]
rs10072682	1.00[AMR][1000 genomes]
rs10076310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10479362	1.00[AMR][1000 genomes]
rs4591727	1.00[AMR][1000 genomes]
rs57695762	1.00[AMR][1000 genomes]
rs57946419	1.00[AMR][1000 genomes]
rs73194621	1.00[AMR][1000 genomes]
rs73194663	1.00[AMR][1000 genomes]
rs73194665	1.00[AMR][1000 genomes]
rs73194668	1.00[AMR][1000 genomes]
rs73194679	1.00[AMR][1000 genomes]
rs73196406	1.00[AMR][1000 genomes]
rs73196467	1.00[AMR][1000 genomes]
rs73196471	1.00[AMR][1000 genomes]
rs7446410	1.00[AMR][1000 genomes]
rs7700764	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7701521	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7706900	1.00[AMR][1000 genomes]
rs7729338	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882655	chr5:105308346-105663646	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv599285	chr5:105355890-106271223	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv882660	chr5:105358229-105685009	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv882666	chr5:105377638-105604520	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2756534	chr5:105427073-105772632	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1028686	chr5:105458958-105624987	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv428123	chr5:105475935-106025350	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv3427509	chr5:105505316-105871362	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv462373	chr5:105507543-105795975	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv599291	chr5:105507543-105795975	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv471036	chr5:105507543-105955784	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:105589400-105590600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
2	chr5:105589600-105590600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:105589800-105590600	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr5:105590000-105590400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr5:105590000-105590400	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr5:105590000-105590800	Weak transcription	H9 Cell Line	embryonic stem cell

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