Variant report

Variant	rs10043203
Chromosome Location	chr5:92768961-92768962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10036284	1.00[ASN][1000 genomes]
rs4242245	1.00[ASN][1000 genomes]
rs7443770	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830402	chr5:92703901-92847345	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10043203	CCL1	trans	lymphoblastoid	seeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92743600-92799200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr5:92747400-92769400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr5:92754000-92775600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:92758200-92777800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:92759200-92773800	Weak transcription	Ovary	ovary
6	chr5:92760200-92798000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:92761400-92769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:92761400-92775000	Weak transcription	NHLF	lung
9	chr5:92761400-92778400	Weak transcription	Fetal Kidney	kidney
10	chr5:92761600-92773800	Weak transcription	Brain Substantia Nigra	brain
11	chr5:92764400-92769200	Weak transcription	HSMM	muscle
12	chr5:92765200-92769400	Weak transcription	Osteobl	bone
13	chr5:92765400-92769000	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr5:92765400-92775000	Weak transcription	Fetal Brain Female	brain
15	chr5:92766800-92774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:92767400-92776400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:92767400-92777800	Weak transcription	Fetal Stomach	stomach
18	chr5:92767400-92797000	Weak transcription	Fetal Brain Male	brain
19	chr5:92767600-92771200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:92767800-92776800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links