Variant report

Variant	rs10044205
Chromosome Location	chr5:94892862-94892863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:94892616..94895050-chr5:95181504..95183040,2	MCF-7	breast:
2	chr5:94888891..94893786-chr5:94981389..94987516,11	K562	blood:
3	chr5:94889492..94895025-chr5:94981557..94985063,8	K562	blood:
4	chr5:94885887..94888055-chr5:94890822..94893309,3	K562	blood:
5	chr5:94889148..94891962-chr5:94892146..94893739,2	K562	blood:

Variant related genes	Relation type
ENSG00000198677	Chromatin interaction
ENSG00000164291	Chromatin interaction
ENSG00000175449	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10062603	1.00[AFR][1000 genomes]
rs10476656	1.00[AFR][1000 genomes]
rs9314151	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882388	chr5:94764006-94925849	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94891400-94900200	Weak transcription	Gastric	stomach
2	chr5:94891800-94893800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr5:94891800-94900200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr5:94891800-94902800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr5:94892000-94906200	Weak transcription	Brain Hippocampus Middle	brain
6	chr5:94892200-94893000	Enhancers	HSMM	muscle
7	chr5:94892200-94894200	Enhancers	Osteobl	bone
8	chr5:94892200-94900200	Weak transcription	Fetal Brain Female	brain
9	chr5:94892200-94902000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:94892200-94902400	Weak transcription	Adipose Nuclei	Adipose
11	chr5:94892200-94903000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:94892200-94904400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:94892200-94904400	Weak transcription	Aorta	Aorta
14	chr5:94892200-94906000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr5:94892200-94906800	Weak transcription	Fetal Kidney	kidney
16	chr5:94892200-94907200	Weak transcription	Rectal Smooth Muscle	rectum
17	chr5:94892200-94907400	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr5:94892200-94934400	Weak transcription	Fetal Stomach	stomach
19	chr5:94892200-94936600	Weak transcription	Fetal Lung	lung
20	chr5:94892400-94893000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr5:94892400-94893000	Enhancers	Muscle Satellite Cultured Cells	--
22	chr5:94892400-94893000	Enhancers	Dnd41	blood
23	chr5:94892400-94893600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr5:94892400-94893600	Weak transcription	HSMMtube	muscle
25	chr5:94892400-94893600	Weak transcription	NHLF	lung
26	chr5:94892400-94893800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr5:94892400-94893800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr5:94892400-94893800	Enhancers	NHDF-Ad	bronchial
29	chr5:94892400-94894000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:94892400-94894000	Enhancers	K562	blood
31	chr5:94892400-94897000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr5:94892400-94900200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr5:94892400-94900400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:94892400-94901400	Weak transcription	Primary T cells from cord blood	blood
35	chr5:94892400-94902000	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr5:94892400-94902000	Weak transcription	Liver	Liver
37	chr5:94892400-94902200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr5:94892400-94902400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr5:94892400-94902400	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr5:94892400-94902400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr5:94892400-94902600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr5:94892400-94902600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr5:94892400-94902600	Weak transcription	Primary B cells from cord blood	blood
44	chr5:94892400-94902600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr5:94892400-94902800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr5:94892400-94902800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr5:94892400-94902800	Weak transcription	Left Ventricle	heart
48	chr5:94892400-94902800	Weak transcription	Rectal Mucosa Donor 29	rectum
49	chr5:94892400-94902800	Weak transcription	GM12878-XiMat	blood
50	chr5:94892400-94903000	Weak transcription	Primary B cells from peripheral blood	blood

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