Variant report

Variant	rs10044377
Chromosome Location	chr5:113579545-113579546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10043058	1.00[AMR][1000 genomes]
rs10043160	0.86[AFR][1000 genomes]
rs13359151	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882727	chr5:113548400-113602162	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1029021	chr5:113551892-113599644	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv537865	chr5:113551892-113599644	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113579000-113579600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr5:113579000-113579600	Active TSS	Stomach Smooth Muscle	stomach
3	chr5:113579200-113579600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr5:113579200-113579800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr5:113579200-113579800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr5:113579400-113579800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr5:113579400-113580000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr5:113579400-113581400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:113579400-113585600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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