Variant report

Variant	rs10045071
Chromosome Location	chr5:90127959-90127960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90124795..90126326-chr5:90127337..90129683,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10053303	0.85[CEU][hapmap]
rs10059629	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10075623	0.99[ASN][1000 genomes]
rs10474336	0.84[CHB][hapmap]
rs10514340	0.85[CEU][hapmap]
rs12522395	0.86[CHB][hapmap]
rs13159353	0.89[ASN][1000 genomes]
rs16869175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2139191	0.81[ASN][1000 genomes]
rs2247415	0.85[CHB][hapmap];0.87[ASN][1000 genomes]
rs2366935	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2438338	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs2438342	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs2438343	0.84[CHB][hapmap]
rs2438344	0.85[CHB][hapmap]
rs2438351	0.85[CHB][hapmap]
rs2438353	0.84[CHB][hapmap];0.84[ASN][1000 genomes]
rs2443068	1.00[CHB][hapmap]
rs3098356	1.00[CHB][hapmap]
rs4916698	0.82[CEU][hapmap]
rs4916827	1.00[CHB][hapmap]
rs4916829	1.00[CHB][hapmap]
rs6865577	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6890101	0.99[ASN][1000 genomes]
rs881289	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432750	chr5:89410113-90137144	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv529544	chr5:89523963-90412409	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv531965	chr5:89886550-90145002	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	nsv882367	chr5:89956991-90209824	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv1015449	chr5:89968626-90219398	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv517049	chr5:90003131-90262475	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90103000-90140800	Weak transcription	Brain Germinal Matrix	brain
2	chr5:90104600-90142000	Weak transcription	Brain Anterior Caudate	brain
3	chr5:90106800-90128400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr5:90110200-90149600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr5:90112000-90132800	Weak transcription	K562	blood
6	chr5:90112000-90151200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:90112000-90160600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr5:90112000-90175800	Weak transcription	Fetal Brain Female	brain
9	chr5:90112200-90142200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:90118200-90128600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr5:90119000-90131000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:90119200-90140800	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr5:90124800-90128800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:90126000-90135400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr5:90126400-90131800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr5:90127200-90136400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr5:90127200-90144600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr5:90127800-90131200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr5:90127800-90131600	Weak transcription	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links