Variant report

Variant	rs10045122
Chromosome Location	chr5:49870463-49870464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10038842	1.00[ASN][1000 genomes]
rs10039639	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10041633	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10043477	1.00[ASN][1000 genomes]
rs10052001	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10070517	1.00[ASN][1000 genomes]
rs10071272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10434558	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10471888	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10471893	1.00[ASN][1000 genomes]
rs10471940	1.00[ASN][1000 genomes]
rs10471956	0.89[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10755235	0.90[CEU][hapmap];0.91[GIH][hapmap];0.85[MEX][hapmap]
rs10940424	0.85[EUR][1000 genomes]
rs10940497	1.00[CEU][hapmap]
rs11738761	0.85[EUR][1000 genomes]
rs11741205	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11745945	0.85[EUR][1000 genomes]
rs11750771	1.00[CEU][hapmap];0.91[GIH][hapmap]
rs12188262	1.00[CEU][hapmap]
rs12188654	1.00[CEU][hapmap];0.91[GIH][hapmap];0.80[TSI][hapmap]
rs12518710	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13159764	0.83[AMR][1000 genomes]
rs13162921	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13164951	0.89[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13355372	0.92[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13355434	1.00[ASN][1000 genomes]
rs1375127	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs154138	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs16884018	1.00[CEU][hapmap]
rs169497	0.91[CEU][hapmap];0.82[GIH][hapmap]
rs182230	1.00[CEU][hapmap]
rs1839128	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs1972980	0.82[EUR][1000 genomes]
rs1988613	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2034392	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2034393	0.85[EUR][1000 genomes]
rs2034394	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2121979	0.85[EUR][1000 genomes]
rs2166893	0.85[EUR][1000 genomes]
rs2166894	0.85[EUR][1000 genomes]
rs2548581	1.00[CEU][hapmap]
rs2548582	0.90[CEU][hapmap]
rs2548583	0.83[CEU][hapmap]
rs26068	1.00[ASN][1000 genomes]
rs2697662	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs282549	1.00[ASN][1000 genomes]
rs282550	1.00[CEU][hapmap]
rs282552	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs282553	1.00[CEU][hapmap];0.82[GIH][hapmap]
rs282559	0.89[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs282561	1.00[CEU][hapmap];0.91[GIH][hapmap]
rs4029420	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4101529	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282859	0.85[EUR][1000 genomes]
rs4440312	0.82[EUR][1000 genomes]
rs4865628	1.00[CEU][hapmap]
rs4865846	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4865895	0.85[EUR][1000 genomes]
rs4865896	0.81[EUR][1000 genomes]
rs4865974	1.00[JPT][hapmap]
rs4866001	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6450292	0.82[EUR][1000 genomes]
rs6450359	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6863575	0.81[EUR][1000 genomes]
rs6869356	1.00[ASN][1000 genomes]
rs6872070	0.85[EUR][1000 genomes]
rs6872496	1.00[CEU][hapmap];0.91[GIH][hapmap]
rs6879306	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6886872	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6888147	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6890519	1.00[CEU][hapmap];0.91[GIH][hapmap]
rs6890869	1.00[CEU][hapmap]
rs73093361	0.97[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73112331	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73112340	1.00[ASN][1000 genomes]
rs7449019	1.00[ASN][1000 genomes]
rs7709831	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7710150	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7711839	0.89[ASW][hapmap];1.00[CEU][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7721050	0.82[EUR][1000 genomes]
rs7723361	0.91[CEU][hapmap];1.00[JPT][hapmap]
rs7728222	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7730847	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7734389	1.00[ASN][1000 genomes]
rs895801	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs921210	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032003	chr5:49455624-49881491	Strong transcription Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1016583	chr5:49455624-50116720	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1023140	chr5:49455624-50121623	Enhancers Active TSS Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1023981	chr5:49584188-49871537	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv537757	chr5:49584188-49871537	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1022067	chr5:49584188-49960083	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv537758	chr5:49584188-49960083	Active TSS Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv918220	chr5:49584188-50111282	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv931010	chr5:49584189-50118254	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv523212	chr5:49597497-50058043	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	esv2757995	chr5:49748352-50058182	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
12	esv2759342	chr5:49748352-50058182	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:49870000-49870600	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
2	chr5:49870000-49870600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:49870000-49872400	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr5:49870000-49873000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr5:49870000-49873200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:49870000-49873200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr5:49870200-49870600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr5:49870200-49870600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr5:49870200-49870600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:49870200-49870800	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr5:49870400-49870800	Active TSS	Monocytes-CD14+_RO01746	blood
12	chr5:49870400-49871200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr5:49870400-49871400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr5:49870400-49872200	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links