Variant report

Variant	rs10045302
Chromosome Location	chr5:145215699-145215700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr5:145214196-145215706	IMR90	lung:	n/a	n/a
2	MAZ	chr5:145214658-145215705	Hela-S3	cervix:	n/a	chr5:145214993-145215002
3	NFYB	chr5:145215513-145215713	K562	blood:	n/a	n/a
4	POLR2A	chr5:145214656-145215888	K562	blood:	n/a	n/a
5	HEY1	chr5:145214644-145215716	K562	blood:	n/a	n/a
6	POLR2A	chr5:145214450-145215738	Hela-S3	cervix:	n/a	n/a
7	CTCF	chr5:145215660-145215810	MCF-7	breast:	n/a	n/a
8	POLR2A	chr5:145214415-145215799	K562	blood:	n/a	n/a
9	E2F6	chr5:145214263-145215709	K562	blood:	n/a	chr5:145214559-145214566 chr5:145215127-145215137 chr5:145214559-145214566 chr5:145215017-145215027 chr5:145214559-145214566 chr5:145214558-145214570
10	GTF2F1	chr5:145214831-145215702	Hela-S3	cervix:	n/a	n/a
11	TCF12	chr5:145213951-145215738	A549	lung:	n/a	chr5:145215110-145215120
12	POLR2A	chr5:145214274-145215734	PBDE	blood:	n/a	n/a
13	RCOR1	chr5:145214001-145216060	IMR90	lung:	n/a	n/a
14	POLR2A	chr5:145214351-145215906	K562	blood:	n/a	n/a
15	POLR2A	chr5:145214408-145215752	HepG2	liver:	n/a	n/a
16	POLR2A	chr5:145214669-145215729	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:145215103..145216674-chr5:145218968..145221764,2	MCF-7	breast:

Variant related genes	Relation type
PRELID2	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10062574	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12658483	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3329004	chr5:145213984-145216532	Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145212800-145216000	Active TSS	Rectal Smooth Muscle	rectum
2	chr5:145214000-145215800	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr5:145214200-145215800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
4	chr5:145214200-145215800	Active TSS	Aorta	Aorta
5	chr5:145214400-145215800	Active TSS	Primary T cells from cord blood	blood
6	chr5:145214400-145215800	Active TSS	Fetal Kidney	kidney
7	chr5:145214600-145215800	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr5:145214600-145216000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr5:145215000-145215800	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
10	chr5:145215000-145216000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
11	chr5:145215200-145215800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
12	chr5:145215200-145215800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:145215200-145215800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
14	chr5:145215200-145215800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr5:145215200-145215800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:145215200-145215800	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr5:145215200-145215800	Flanking Active TSS	Liver	Liver
18	chr5:145215200-145215800	Flanking Active TSS	Duodenum Mucosa	Duodenum
19	chr5:145215200-145215800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
20	chr5:145215200-145215800	Flanking Active TSS	Fetal Heart	heart
21	chr5:145215200-145215800	Flanking Active TSS	Fetal Lung	lung
22	chr5:145215200-145215800	Flanking Active TSS	Fetal Muscle Trunk	muscle
23	chr5:145215200-145215800	Flanking Active TSS	Fetal Muscle Leg	muscle
24	chr5:145215200-145215800	Flanking Active TSS	Thymus	Thymus
25	chr5:145215200-145215800	Flanking Active TSS	A549	lung
26	chr5:145215200-145215800	Flanking Active TSS	Hela-S3	cervix
27	chr5:145215200-145215800	Flanking Active TSS	K562	blood
28	chr5:145215200-145215800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr5:145215200-145215800	Flanking Active TSS	NHDF-Ad	bronchial
30	chr5:145215200-145215800	Flanking Active TSS	Osteobl	bone
31	chr5:145215200-145216000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr5:145215200-145216000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:145215200-145216000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr5:145215400-145215800	Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr5:145215400-145215800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:145215400-145215800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:145215400-145215800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
38	chr5:145215400-145215800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr5:145215400-145215800	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr5:145215400-145215800	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
41	chr5:145215400-145215800	Flanking Active TSS	Brain Cingulate Gyrus	brain
42	chr5:145215400-145215800	Active TSS	Brain Germinal Matrix	brain
43	chr5:145215400-145215800	Flanking Active TSS	Brain Substantia Nigra	brain
44	chr5:145215400-145215800	Flanking Active TSS	Colonic Mucosa	Colon
45	chr5:145215400-145215800	Flanking Active TSS	Fetal Brain Male	brain
46	chr5:145215400-145215800	Flanking Active TSS	Fetal Intestine Small	intestine
47	chr5:145215400-145215800	Enhancers	Gastric	stomach
48	chr5:145215400-145215800	Flanking Active TSS	Left Ventricle	heart
49	chr5:145215400-145215800	Flanking Active TSS	Pancreas	Pancrea
50	chr5:145215400-145215800	Enhancers	Spleen	Spleen

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